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arima library prep kit v2  (Arima Genomics Inc)


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    Arima Genomics Inc arima library prep kit v2
    Arima Library Prep Kit V2, supplied by Arima Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 1729 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/arima+library+prep+kit+v2/High+Coverage+HiC/pmc13124242-96-26-31
    Average 99 stars, based on 1729 article reviews
    arima library prep kit v2 - by Bioz Stars, 2026-11
    99/100 stars

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    Hi-C:

    Article Title: Haplotype-resolved genome assemblies of BJ and IMR-90 human fibroblast cell lines reveal extensive structural variation and enable reanalysis of historical sequencing data
    Article Snippet: .. Hi-C assays were performed on frozen crosslinked cell pellets using the Arima High Coverage HiC Kit (Arima Genomics, Cat. No. A101030) and libraries were prepared using Arima Library Prep Kit v2 (Arima Genomics, Cat. No. A303011) per manufacturer’s instructions. .. 1.5 μg of proximally ligated DNA suspended in 130 μl of the elution buffer was added to a microTUBE (Covaris, Cat. No. 520 045) and sonicated using a Covaris E220 with the following parameters: temperature (4°C–7°C), peak incident power (105), duty factor (5%), cycles per burst (200), treatment time (75 s).

    Article Title: Mapping the Telomeric 3D Interactome with Telomere-C Reveals Repetitive Element Hubs Associated with Telomere Maintenance
    Article Snippet: .. Frozen crosslinked cell pellets were used for Hi-C library preparation using the Arima High Coverage HiC Kit (Arima Genomics, Cat. No. A101030) and Arima Library Prep Kit v2 (Arima Genomics, Cat. No. A303011), according to the manufacturer’s instructions. .. 1.5 μg of proximity-ligated DNA suspended in 130 μL of the elution buffer was added to a microTUBE (Covaris, Cat. No. 520045) and sonicated using a Covaris E220 with the following parameters: Temperature (4-7 °C), Peak Incident Power (105W), Duty Factor (5%), Cycles per Burst (200), Treatment time (75 s).

    Article Title: Diploid genome assembly of human fibroblast cell lines enables clone specific variant calling, improved read mapping and accurate phasing
    Article Snippet: .. Hi-C assays were performed on frozen crosslinked cell pellets using the Arima High Coverage HiC Kit (Arima Genomics, Cat. No. A101030) and libraries were prepared using Arima Library Prep Kit v2 (Arima Genomics, Cat. No. A303011) per manufacturer’s instructions. .. 1.5 μg of proximally-ligated DNA suspended in 130 μL of the elution buffer was added to a microTUBE (Covaris, Cat. No. 520045) and sonicated using a Covaris E220 with the following parameters: Temperature (4-7 °C), Peak Incident Power (105), Duty Factor (5%), Cycles per Burst (200), Treatment time (75 s).

    Article Title: Chromatin conformation and histone modification profiling across human kidney anatomic regions.
    Article Snippet: The 1-million nuclei pellet was resuspended with 25 μL nuclease-free water and 20 μL was proceeded with the manufacture’s protocol (“Arima-HiC Protocol” section in A160134 v01) for restriction enzyme digestion, end filling, ligation and purification. .. Hi-C library preparation was performed with the Arima Library Prep Kit v2 (A303011, Arima Genomics) with minor changes. .. Briefly, DNA fragmentation was performed with a Diagenode Bioruptor Pico device (6-7 cycles of 15 seconds’ on and 90 seconds’ off on 100 μL DNA products).

    Article Title: The complete human diploid reference genome of RPE-1 identifies the phased epigenetic landscapes from multi-omics data
    Article Snippet: .. HMW DNA from 2 x 10 cells was used to generate Hi-C libraries with the Arima High Coverage HiC+ kit (Arima Genomics A101030), and the Arima Library Prep kit v2 (Arima Genomics A303011) following manufacturer’s instructions. .. Hi-C libraries were sequenced on the Illumina Nova-Seq 6000 to reach a coverage of ∼30x in Hi-C reads.

    Article Title: Chromatin conformation and histone modification profiling across human kidney anatomic regions
    Article Snippet: The 1-million nuclei pellet was resuspended with 25 μL nuclease-free water and 20 μL was proceeded with the manufacture’s protocol (“Arima-HiC Protocol” section in A160134 v01) for restriction enzyme digestion, end filling, ligation and purification. .. Hi-C library preparation was performed with the Arima Library Prep Kit v2 (A303011, Arima Genomics) with minor changes. .. Briefly, DNA fragmentation was performed with a Diagenode Bioruptor Pico device (6-7 cycles of 15 seconds’ on and 90 seconds’ off on 100 μL DNA products).



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